rs31005147 SNP Detail

Summary

• ID
  rs31005147
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90414059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATGA ATACAGGAAA TTAATGTATC
  R
  CATCTTAAAA GATGAACAGA GAAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45489361	mCV23476514	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss135476749	ENSMUSSNP2257688	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		G
ss320837918	CHEV_3_90310674	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31005147					SNP	A	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90414059 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chtop	chromatin target of PRMT1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr580380	regulatory region 580380			1230 bp distal
Rr580381	regulatory region 580381			1722 bp proximal
Tssr34235	transcription start site region 34235			371 bp upstream
Tssr34236	transcription start site region 34236			1307 bp downstream
Tssr34237	transcription start site region 34237			1975 bp downstream