rs31005146 SNP Detail

Summary

• ID
  rs31005146
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41302714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGTGAGAAG TTTTTGCTGT GTGTGCATTT CATTTTGAGA
  TTCAAGAGGC CCATAGATAC CTAAATCTAC ATTCTCTACA GAGTCTGGTC CCCTACAGAA
  Y
  ACTAAGCATT AAATATTAAG CAACTGTAAT AATGTTACTA TCCATGATGA ATGTCTTAAG
  TTTAATGTTT AATTCTTGCA AACCTCCAGG GAGTTTGGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45489360	mCV23395558	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		C
ss60398556	NES15903424	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C	C		C	C	T	C		C	T	C	C		C
ss135041586	ENSMUSSNP4354661	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
ss320728606	CHEV_3_41152201	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31005146					SNP	C	C	C	T	C	C	C	T	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60398556	NES15903424	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41302714 () rs orientation: forward

Symbol	Name	Function Class
Gm66487	predicted gene, 66487	within coordinates
Rr575933	regulatory region 575933	440 bp proximal
Rr575934	regulatory region 575934	615 bp proximal
Rr575935	regulatory region 575935	700 bp proximal