rs31004795 SNP Detail

Summary

• ID
  rs31004795
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:69280613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGATTCTGA TGCTGAAGGA
  AGACTCAGGA GATCCATCTG GCTGCAAAGC CTGTCTTCCC CTCACTGTAC AAAAGCCTTA
  CAGAGTTTTA TAAAGAATAA TTTGAGGGGG CATGGTGGCC TGTGCCTCCA GTTGCAGTGA
  TCACCAGTCA GAGATCAGTG TCAGTGACAT CCTGTCTCAA CTAATGGCAA ACCTTCTACG
  R
  ATATTTTGTG TAATTAAGGT AAAAAAAAAA TAGAACAAGA GTGTTTTTTG CATATTTTTA
  TTTGTGTCTT AGGTATTTAA TAGTGTGCTA TGCTATAGGT TCTTTCAAAC ACCTGTGTTT
  TTTAAAAAAA AATACCTATT TTAAGTAAGC TATCTAACTT TACTGGGCAT ATTGATAGTA
  ATTTTTCATG AGTAGTATTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47006112	NES10766340	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31004795					SNP	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47006112	NES10766340	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69280613 () rs orientation: forward

Symbol	Name	Function Class
Ppm1l	protein phosphatase 1 (formerly 2C)-like	Intron
Rr578170	regulatory region 578170	342 bp distal
Rr578171	regulatory region 578171	333 bp proximal
Rr578172	regulatory region 578172	1555 bp proximal
Tssr29541	transcription start site region 29541	449 bp upstream