rs31004794 SNP Detail

Summary

• ID
  rs31004794
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:69280603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAGATTTC AGGATTCTGA
  TGCTGAAGGA AGACTCAGGA GATCCATCTG GCTGCAAAGC CTGTCTTCCC CTCACTGTAC
  AAAAGCCTTA CAGAGTTTTA TAAAGAATAA TTTGAGGGGG CATGGTGGCC TGTGCCTCCA
  GTTGCAGTGA TCACCAGTCA GAGATCAGTG TCAGTGACAT CCTGTCTCAA CTAATGGCAA
  W
  CCTTCTACGG ATATTTTGTG TAATTAAGGT AAAAAAAAAA TAGAACAAGA GTGTTTTTTG
  CATATTTTTA TTTGTGTCTT AGGTATTTAA TAGTGTGCTA TGCTATAGGT TCTTTCAAAC
  ACCTGTGTTT TTTAAAAAAA AATACCTATT TTAAGTAAGC TATCTAACTT TACTGGGCAT
  ATTGATAGTA ATTTTTCATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47006110	NES10766339	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31004794					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47006110	NES10766339	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69280603 () rs orientation: forward

Symbol	Name	Function Class
Ppm1l	protein phosphatase 1 (formerly 2C)-like	Intron
Rr578170	regulatory region 578170	332 bp distal
Rr578171	regulatory region 578171	343 bp proximal
Rr578172	regulatory region 578172	1565 bp proximal
Tssr29541	transcription start site region 29541	459 bp upstream