rs31004727 SNP Detail

Summary

• ID
  rs31004727
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:42027694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTAC TAAAATGTCA CCCGGTGCCT
  Y
  AGTCCTCCCA ATAACGCTGA TGCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45488471	mCV24971729	ABI	CRAMUS_MOUSE	f	SNP		C	T			T	C
ss60395663	NES15895187	PERLEGEN	MM_PANEL2	f	SNP	C			C	C		C		C	C	C		T
ss135047764	ENSMUSSNP2543750	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T				C
ss320730602	CHEV_3_41877181	CHEVERUD	SCREENING_POP	f	SNP								C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31004727					SNP	C	C	T	C	C	T	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60395663	NES15895187	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:42027694 () rs orientation: forward

Symbol	Name	Function Class
Rr576014	regulatory region 576014	1298 bp proximal
Rr576015	regulatory region 576015	1383 bp proximal