rs31004695 SNP Detail

Summary

• ID
  rs31004695
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121087359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGTAAGAAA TACAAGTTAT
  TTCAAGTGAG ATGCAAAGCT ACTGGGGACT TTTGAACACA AGTAAAATAT TATCACATGA
  AAATTACCTC AAGATGTATA GGGAGAGGAA GTGGGGATAT GATCTATATA AAGCTGTATT
  TATAATTTAT ATGACAGTGG CGTGAAGCAA GATGAGGTGG TAAGAAGTGA TTGGAAGGGT
  R
  GAGAGATGGC TCAGCAGTTA AGGTCTTTGT TCTTGTGCAG GACCAGGGTT TGGGTCCCAG
  CACCCATATG GTGGCTCACA GCCATCTATA ACTCCAGTTC TAGGAACCCT GTGGGGATTG
  AGTGGGGTCC TGAGTGAATG TGTATTGTTG ATATGGCCAG GCCCCGTGGG AGTGGCAAAG
  CCTTCTGTAG GTGAAGTGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45489533	mCV23993251	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss135717696	ENSMUSSNP312478	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31004695					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121087359 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alg14	asparagine-linked glycosylation 14			Intron
				Noncoding-Transcript-Variant
Cpgi13756	CpG island 13756			1421 bp distal
Rr367543	regulatory region 367543			1871 bp downstream
Rr584039	regulatory region 584039			1873 bp distal
Rr584040	regulatory region 584040			1858 bp distal
Rr584041	regulatory region 584041			566 bp proximal
Rr584042	regulatory region 584042			686 bp proximal
Tssr31434	transcription start site region 31434			1893 bp downstream
Tssr31435	transcription start site region 31435			1878 bp downstream
Tssr31436	transcription start site region 31436			1848 bp downstream