rs31004142 SNP Detail

Summary

• ID
  rs31004142
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90568511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTTA AGAGGGTTTA TGTAAGTAAA
  R
  CATTGGGGAA GTCCTCACAA TGGTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45488562	mCV24984105	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss135478371	ENSMUSSNP2731823	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
ss320838520	CHEV_3_90465126	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31004142					SNP	G	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90568511 () rs orientation: forward

Symbol	Name	Function Class
Tssr946	transcription start site region 946	1214 bp downstream
Tssr30264	transcription start site region 30264	1544 bp downstream
Tssr34247	transcription start site region 34247	1768 bp upstream
Tssr34248	transcription start site region 34248	1756 bp upstream