rs31004005 SNP Detail

Summary

• ID
  rs31004005
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58419820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACGCTAGCT AGTTTCAAGA
  TAAAAGAAAC CATCCAGGAC AGGGCCTAAG TCTCATAAGG TATTTGTCGG TCAGTTCTTT
  GTCCTAAGTA ACAGACTTCA GGAGGGTGTA GTCTGATACT CAAGTGGGAG AAGAAAAGCA
  GCTGTAATTT AACATTCCAG CCTTTTTGTT CATATAGAAG AAAGAGAGAA CTGATTTTTT
  W
  AAAATTTATT TATTATATGT GTGTACACTG TAGCTGTCTT CAGAAACAAC AGAAGGGGGC
  ATCAGATTTT TGTTACGGAT GGTTGTGAGC CACCATGTGG TTGCTGGGAT TTGAACTCAG
  GACCTTTGGG AGAGCAGTTG GCGCTCTTAA CCGATGAGCC ATCTCACCAG CTCAAGGACT
  GATTTTATAG AAGGAGGGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45488256	mCV25119326	ABI	CRAMUS_MOUSE	f	SNP	T	A	T
ss135207005	ENSMUSSNP6862635	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss320783109	CHEV_3_58316321	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31004005					SNP	T	A	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58419820 () rs orientation: forward

Symbol	Name	Function Class
Rr577240	regulatory region 577240	512 bp distal
Rr577241	regulatory region 577241	592 bp distal
Rr577242	regulatory region 577242	1164 bp proximal
Rr577243	regulatory region 577243	1266 bp proximal