rs31003977 SNP Detail

Summary

• ID
  rs31003977
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:112185917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCAGGACCG ACACGCCTGC TCACACTGTC AGTAACTCCA
  GTCTCTGGGA TTCTGGTGTC CTCTTCTGGC CACCAGTAGG CACTGCCTAC CCATGGTCCA
  M
  ATAAAGACAA GCAGGTGACA CACAAAATAA AACTGAATGT GGTTTAAAAT AAAGGCAACT
  CATCAAACTC AGGACTTGGG AAATTCGGAA AATTCTGAG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45987953	mCV24108631	ABI	CRAMUS_MOUSE	f	SNP	A	C	A	C
ss133558886	ENSMUSSNP4858483	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C		C
ss321908053	CHEV_6_112158950	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31003977					SNP	A	C	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:112185917 () rs orientation: forward

Symbol	Name	Function Class
1700054K19Rik	RIKEN cDNA 1700054K19 gene	1752 bp upstream
Rr636305	regulatory region 636305	1359 bp distal
Rr636306	regulatory region 636306	1507 bp distal
Rr636307	regulatory region 636307	14 bp distal
Rr636308	regulatory region 636308	4 bp proximal
Rr636309	regulatory region 636309	1237 bp proximal
Rr636310	regulatory region 636310	1738 bp proximal