rs31003917 SNP Detail

Summary

• ID
  rs31003917
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:69279534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTTGTAT GTAATTAAAA
  ATTGCCCCGT GTCGTTCTAG AGATGGGGAT GCTTGGAAAT AACCCTGTAA GTCGTGAGTA
  GGTCCCTCTG GGGAACTTTA GATTGCAGCA GTGCAGCTCT GAGTCCGGTA CTGGACCTGA
  GATCCACTTT CTCTGCAGTG CCAGCTTACT TAGGACTCTT CCATATGTCT TCCACTCTCC
  R
  AAAGTTTATT CCTGACTTTT CTTTGTATTT GTGCGTTTCT CTGGAATCTC ATTGCATTCC
  AGTAGAGTCT TGGCAGATGA CAAGATAAAT GCGTATTCAA TATTCCTTCT ATTAATAGCA
  ATGCGATCTT TATTGAGCTC TTATTAGTGA AGTGTTGCAA TAAATAACAT TACCTACATA
  GTTTCATATC ATCCTTTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47006102	NES10766403	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31003917					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47006102	NES10766403	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69279534 () rs orientation: forward

Symbol	Name	Function Class
Ppm1l	protein phosphatase 1 (formerly 2C)-like	Intron
Rr578170	regulatory region 578170	716 bp proximal
Rr578171	regulatory region 578171	1412 bp proximal
Tssr29541	transcription start site region 29541	1528 bp upstream