rs31003527 SNP Detail

Summary

• ID
  rs31003527
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145644957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTCGAAT ATCTATGAAG
  ACAATGGAGA CGATGCCCCA CAGAACGCCA AGAAAGCCAG GCTTCTGCCT GAAGGGGAGG
  AGACAGTGGA ATCAGGTAAG AGAGAGGAGT GTTGTTGTTT AAGATTTCAG CACTCAGAAA
  GAAGAAAATC CTTCCGGACA AGGTTTACAG CCTAGTGAGT TGGAAGGCTT GCCCAGAAAT
  K
  GTCTTTGGAT GCTAACGGTC TTTCGATCGT TCGGGTTTTT TGTTTTGTTT TGGGGGGAGA
  CAAGGTCTAT GTAACCTGAA TGTTCTCGGA ACTCATTATG TAGACCAGTC TCTTGAGTGA
  GGCCAGCCCA GCCTGTCTGT GCCTCAGTAT CTCAGTGCTA GGACTGAAGG TGTGTGCCAG
  CAACCCACGT TTCCGCTCCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45489614	mCV24197601	ABI	CRAMUS_MOUSE	f	SNP	G	G	T
ss136040819	ENSMUSSNP121581	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
ss321009174	CHEV_3_145602166	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31003527					SNP	G	G	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145644957 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2410004B18Rik	RIKEN cDNA 2410004B18 gene			Intron
				Noncoding-Transcript-Variant
Rr398108	regulatory region 398108			1068 bp downstream
Rr586873	regulatory region 586873			1178 bp distal
Rr586874	regulatory region 586874			1232 bp distal
Rr586875	regulatory region 586875			1028 bp distal
Rr586876	regulatory region 586876			80 bp proximal
Tssr32317	transcription start site region 32317			1139 bp downstream