rs31003008 SNP Detail

Summary

• ID
  rs31003008
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108584249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTACTACAGC CTATATTTTA GACTTAACTG CCCTCAAATG
  AGCTCTGTGG ATTGTCCATA ATCCTTTCAA AACTCAGAGC CCGTTCTTAG CTCCCAGGTC
  W
  CCTAGAGCAT ATGTTTCCAG TATTATAAAA AGGGGATTAC AGCTAGTAGC ACAGAGAGAT
  TTTGAAAAAG ATTGTATTGT AGCCAAAATA GATGAAAAG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45986058	mCV25345572	ABI	CRAMUS_MOUSE	f	SNP		A						A		T
ss51811453	NES14765854	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		A	T	A	A	A	A	A	A	A
ss133505837	ENSMUSSNP3710489	ENSEMBL	ENSEMBL_Sanger	f	SNP		A								T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31003008					SNP	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51811453	NES14765854	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108584249 () rs orientation: forward

Symbol	Name	Function Class
0610040F04Rik	RIKEN cDNA 0610040F04 gene	within coordinates
Gm67596	predicted gene, 67596	within coordinates
Rr636144	regulatory region 636144	737 bp distal
Rr636145	regulatory region 636145	654 bp proximal