rs31002983 SNP Detail

Summary

• ID
  rs31002983
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:69279035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGGATGAA GTTATCAGCC
  AGTAATATAT GCATACTTTA AGCTTAACTA GCTATCACTA AATTGTTCCC CACATTGATT
  GAATTAAATT ATCATTCCAT TACAGTGTAT CACAGGTATT GGGCTGAGGT ATTGTGTGAG
  AGGTGACATT GCCAGTACCT TGTTCCTCTC TAAGTTTTGA ACCCTTGGTA TGTAAGTGTT
  S
  GTGATACTGA GATCTGAACC AGGGAATTTA ACCGTAGGAA GTCTTGGTGA ACCTGGCTTG
  TTCTTTGAGA GCCTACCTGT CAGTGTTAGT TGGTTTAATG GCATGTTGCT ATTCCTGAAA
  GCTGTACCCT TTGATTTGTT TTGTTGCTGC TTCTAACCAG TCCGAATCAT TTTATTTTTC
  ATTTATTGCT ACAACTAAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47006098	NES10766399	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31002983					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47006098	NES10766399	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69279035 () rs orientation: forward

Symbol	Name	Function Class
Ppm1l	protein phosphatase 1 (formerly 2C)-like	Intron
Rr578170	regulatory region 578170	1215 bp proximal
Rr578171	regulatory region 578171	1911 bp proximal