rs31002917 SNP Detail

Summary

• ID
  rs31002917
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116112431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCCCAAAAA AACAAAACCC CTTTTTGGCC
  CCAATAAATG AGTAGTTCAG ACAGGTCACT CTTCAGAGAG AACAAAGTTT TGCTCAATAG
  CAACTGTCAA AAGGGAGATT TGAAGGAGGC tgtgtgagtg agtgagtgag tgagtgagtg
  W
  gtgtgtgtgt gtgtgtgtgt gtgtgtgttg tgtAcctgta attctagctc tcaggagact
  aacacaggaa gatggagagt tcaaggtcaa tctacactaa atatacagca agttctaagc
  cagtcagggc catacagtga cactgattta                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45986350	mCV24116841	ABI	CRAMUS_MOUSE	f	SNP	A	A	T
ss321917234	CHEV_6_116085488	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31002917					SNP	A	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116112431 () rs orientation: forward

Symbol	Name	Function Class
Gm66805	predicted gene, 66805	1950 bp upstream
Rr637158	regulatory region 637158	527 bp proximal
Rr637159	regulatory region 637159	654 bp proximal
Rr637160	regulatory region 637160	944 bp proximal
Tmcc1	transmembrane and coiled coil domains 1	Intron
Tssr58351	transcription start site region 58351	1947 bp upstream
Tssr62558	transcription start site region 62558	1577 bp upstream
Tssr62559	transcription start site region 62559	1562 bp upstream