rs31001858 SNP Detail

Summary

• ID
  rs31001858
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19372221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGGGTTG GGAAGAGGCC
  TTTCCTGAAC GAGAGACCCG GTACAGATGT CTAGTGCATA AGTAGCTCCA AGATAGGGAG
  AGCCTAATAT CCAGAAGCAG GGCAGGCAGG CAAGCTCAGG CCACTGAAGG CCCTTGTTGG
  CCTGTTGGAG GACTTGTGTT TTCTTCTGAA CTATAATGGA AAGCCAGTGC AATATTTACA
  K
  CTGTGCTTTG CAACAAACTG GCATTCATAT CTAATTTATA TATGTTTTAA AATGTCTCTG
  GCTATAGCTT TATAGACAGT GGTTTCAAAA TGGAAATCTG AAGCAAGGAA ATCTTCCTAA
  TAGTTTTAAA TATCCTGAAG GAGAGATGAG AGATGAGAGA TGATGGTGCC TTCAAGTTTT
  TCAGGCTGCA TTATGCAAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45488157	mCV22547985	ABI	CRAMUS_MOUSE	f	SNP	T	G	T	T
ss134666651	ENSMUSSNP2825425	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G		T
ss320678409	CHEV_3_19218057	CHEVERUD	SCREENING_POP	f	SNP					T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31001858					SNP	T	G	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19372221 () rs orientation: forward

Symbol	Name	Function Class
Gm66414	predicted gene, 66414	1247 bp downstream
Rr573974	regulatory region 573974	905 bp proximal