rs31001327 SNP Detail

Summary

• ID
  rs31001327
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56881085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAGATAC TGCCTTAAAA
  GCAAACAAAC AGAACAAGGG ACAGTAACAA AACATAAAAC TTCAGGACGG AGGACAGGTG
  GGGTGGGGGT GAAGCCGAGA GGCAGGCTAG TTAGCATGTA CAGAGCTCTG GGCTCTACTC
  CAAGAACCAC AAACAACAAG ACAGTGTCAG AGAGGTGAAC GCACTGTGAT ACACATGAGA
  Y
  ACAGACATAT GAAACTCTTA GAAACGAATG GTGCTGTACC CGTTGAGTCA AGCCTATAAT
  CCCAGGACTT GGGAGGAAGG AACAGGGGGC CACTGTCCCA GATCAGGCAA CAGTAAGAGC
  CAGCCTTAAA AACAATAAAA TAAGATGTTG TACGTGGCTA AACTTCACTA GCTTCTGCTG
  TGGGTGTGGC TCAGTACACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45987722	mCV23495491	ABI	CRAMUS_MOUSE	f	SNP		T	C					C	C
ss60887166	NES15965976	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	C	T	T	C	T	C
ss133233762	ENSMUSSNP6664250	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31001327					SNP	T	T	C	C	C	C	C	C	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60887166	NES15965976	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56881085 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm3793	predicted gene 3793			1811 bp downstream
Gm53332	predicted gene, 53332			within coordinates
Nt5c3	5'-nucleotidase, cytosolic III			Intron
				Noncoding-Transcript-Variant
Rr379412	regulatory region 379412			1280 bp downstream
Rr631116	regulatory region 631116			1724 bp distal
Rr631117	regulatory region 631117			1012 bp distal
Rr631118	regulatory region 631118			928 bp distal
Rr631119	regulatory region 631119			610 bp distal
Rr631120	regulatory region 631120			within coordinates
Rr631121	regulatory region 631121			791 bp proximal
Tssr1860	transcription start site region 1860			1956 bp upstream