rs31000555 SNP Detail

Summary

• ID
  rs31000555
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:30908728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAATG GGTCTGCCAA AATCTCGCCA
  R
  CAGCTCTCCA GACAGGAGCC TCCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45489010	mCV25261806	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss134733969	ENSMUSSNP1617167	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320694176	CHEV_3_30753501	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31000555					SNP	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30908728 () rs orientation: forward

Symbol	Name	Function Class
Gm42199	predicted gene, 42199	within coordinates
Gpr160	G protein-coupled receptor 160	1371 bp upstream
Rr574830	regulatory region 574830	211 bp proximal
Rr574831	regulatory region 574831	817 bp proximal
Rr574832	regulatory region 574832	1332 bp proximal
Rr574833	regulatory region 574833	1447 bp proximal
Rr574834	regulatory region 574834	1779 bp proximal
Tssr28695	transcription start site region 28695	1151 bp upstream
Tssr28696	transcription start site region 28696	1367 bp upstream
Tssr28697	transcription start site region 28697	1425 bp upstream
Tssr28698	transcription start site region 28698	1435 bp upstream