rs31000402 SNP Detail

Summary

• ID
  rs31000402
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87342901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCCCTTTTA CGTATGTGTA GCCTCACCTT ACCATTAATG
  GTGTTACCGT AACAATCCCA CAGCCATGAT CACGTCTGAT GCTTACATGC TCAGACAGTG
  Y
  TGAATGTCAG CCATTTTTTA TAGAACCATC TTCTCATAAT CTCCTTAAGG TACTTTCCCC
  AGCAGCCAAA ATGTGGTGTT GAAAGCATGT GATTATTAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45488721	mCV24898893	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					C		T
ss60422897	NES15921554	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T	T	C	T		C	C	T	C		T
ss135461473	ENSMUSSNP2085446	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
ss320833442	CHEV_3_87239516	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31000402					SNP	T	T	T	T	T	T	T	C	T	T	C	T	T	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60422897	NES15921554	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87342901 () rs orientation: forward

Symbol	Name	Function Class
Fcrl5	Fc receptor-like 5	183 bp upstream
Rr397756	regulatory region 397756	6 bp upstream
Rr579488	regulatory region 579488	within coordinates
Tssr29807	transcription start site region 29807	170 bp upstream
Tssr29808	transcription start site region 29808	204 bp upstream
Tssr29809	transcription start site region 29809	226 bp upstream