rs31000244 SNP Detail

Summary

• ID
  rs31000244
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17763848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAGTTTG TCCTAAAACT
  ATTAGTTTGG GGGCTAATGT GAATCAACAA ACAGCTACTG ATAATACAAA AAGCTAAACT
  ATTGGGAATT CTTGACATTA ATAGAGACTT CACACTTATT TTTGTAACCC ATTTGGAAAG
  TTGTGAAGAT ATTAGCATCA TGAGCCTGAG TTACTGGCTT TTCTTTTCCT GAGCTGGTTT
  R
  CATTTGAGGA GGTCCCAGAC TACCAAGTAA CTAGTAGTTA GTTGCTGTTT AAAAATGGCT
  TCCTGGGAAT GCTATTATGC TTGGAGCTCA ATCCATGTGT TAAGACTTGG ATTTCTTGTG
  CTTGACTAGA ACTCCTGGAA CCGTAACATT TCTAGACTGC CTTTCATTCA GCTAAGCTCT
  CTTCCTACAG TTGAGCTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45986206	mCV22806606	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss133022217	ENSMUSSNP4067812	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31000244					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17763848 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm52895	predicted gene, 52895			1700 bp upstream
Rr626856	regulatory region 626856			86 bp proximal
St7	suppression of tumorigenicity 7			Intron
				Noncoding-Transcript-Variant
Tssr55099	transcription start site region 55099			964 bp downstream