rs31000211 SNP Detail

Summary

• ID
  rs31000211
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:85241854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAA ATCTATTTAG GGGGGCCCCA
  R
  AGAGGCTTCT CACCCCAACA ATCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45986716	mCV24831319	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31000211					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85241854 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr824	regulatory region 824			within coordinates
Rr633161	regulatory region 633161			1481 bp distal
Rr633162	regulatory region 633162			1844 bp distal
Rr633163	regulatory region 633163			1713 bp distal
Rr633164	regulatory region 633164			1535 bp distal
Rr633165	regulatory region 633165			within coordinates
Sfxn5	sideroflexin 5			Intron
				Noncoding-Transcript-Variant