rs30999972 SNP Detail

Summary

• ID
  rs30999972
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152054780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATTTGAG GTGAGTACAG
  TTGGTTTATC TTTCTATAAG AAGATTCACG GGGCTGGAGA GATGGCGCAG TGTTTAAGAG
  GGCTTACCAA GGTCCTGAAT TAAATTTCTA GCTCAAGTAG GTAGCTTGAA CACCTTTATC
  TGGTTTCCAT GGACACAAGC AAACACACAT ACACATAAAA TAATACAAAT AAAGCACCCG
  Y
  AGGGCACATG AATTTTGTGC AGTGTGGTGT CTGTATGTGT AATGAGAACT CATATTTAAG
  AGACAGTGCA TTTGTGTTAC TTCAGAGAGT AGGTAGGTCA GTAACCTGTT GAAGGCAAGG
  CTCTCCTAAT AAGAGGAGTG GCCCATAGGG CTGTAGCGAT GTGGGAGAGC ACTTAGTATG
  CACAAGGCCC CGACTCTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45488517	mCV25024211	ABI	CRAMUS_MOUSE	f	SNP	C	C		T
ss136102632	ENSMUSSNP2183023	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C	T
ss321028724	CHEV_3_152012107	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30999972					SNP	C	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152054780 () rs orientation: forward

Symbol	Name	Function Class
Rr587535	regulatory region 587535	1482 bp distal
Rr587536	regulatory region 587536	1465 bp proximal
Tssr32407	transcription start site region 32407	569 bp downstream
Tssr32408	transcription start site region 32408	861 bp upstream
Usp33	ubiquitin specific peptidase 33	Intron