rs30999968 SNP Detail

Summary

• ID
  rs30999968
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19402526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTGAT TTTTCAAGAC
  AGGGTTTCTC TGGGTAGCCC TAGCTGTCCT GGAACTCACT CTGTAGAACA GGCTGGCCTC
  GAACTCAGAA ATCTGCCTGC CTCTGCCTCC CGAGTGCTGG GATTACTCAG AGGCACTCAA
  ATTATTTTAT CTTTTGCATA TTACTTTCTT GACAACAGGT AAGTATATTT TTATGCTGTA
  S
  TTTCAGATCC TCTTTCTTAA AGTAGTAACA TTTGAAAGCT GTTTCTTTCC AAAGCCTCTA
  CTGCCGTTTC CCTCATTAGC TGACTTTTAA CTAAATCTGT GCACATACAG CACAGGGTCT
  GGAAACTAGC ACACATCCTT AAATAACCTT GGCACGTATT TCTTGTTATG TAGGCTTACT
  AGACTGACAT AATTTTCATT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45488512	mCV25299781	ABI	CRAMUS_MOUSE	f	SNP		G	C					G
ss46825081	NES10846231	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	C	G	G	G	C	G	G	C	G
ss134667149	ENSMUSSNP1641947	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30999968					SNP	G	G	C	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46825081	NES10846231	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19402526 () rs orientation: forward

Symbol	Name	Function Class
Gm52602	predicted gene, 52602	578 bp downstream
Rr397615	regulatory region 397615	1680 bp upstream
Rr573976	regulatory region 573976	within coordinates
Rr573977	regulatory region 573977	1527 bp proximal
Rr573978	regulatory region 573978	1792 bp proximal