rs30999502 SNP Detail

Summary

• ID
  rs30999502
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95040617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGCA AAGCTAGGGA AACGAGAAGT
  R
  AATGATGTGT GTGGTGTGTG GTGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45489408	mCV24559819	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss135510080	ENSMUSSNP3334719	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
ss320841141	CHEV_3_94937228	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30999502					SNP	G	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95040617 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13498	CpG island 13498			501 bp proximal
D3Umi10	DNA segment, Chr 3, University of Michigan 10			421 bp proximal
Lysmd1	LysM, putative peptidoglycan-binding, domain containing 1			782 bp upstream
Rr367480	regulatory region 367480			600 bp upstream
Rr580822	regulatory region 580822			717 bp distal
Rr580823	regulatory region 580823			695 bp proximal
Rr580824	regulatory region 580824			793 bp proximal
Scnm1	sodium channel modifier 1			Intron
				Noncoding-Transcript-Variant
Tssr30498	transcription start site region 30498			1866 bp downstream
Tssr34419	transcription start site region 34419			592 bp downstream
Tssr34420	transcription start site region 34420			630 bp downstream
Tssr34421	transcription start site region 34421			683 bp downstream