rs30999161 SNP Detail

Summary

• ID
  rs30999161
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56879899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAGGCTA GCGTTTAAAC
  TGAGCAGCAG GATGGCAGTA TGCTAACACT GCACCAGGGC CTGCTAGATA AGGTGGCACT
  CGGGTTCCGG GAACTTTATC ATTAGGGCCA TGGTTAAGCA GTTTACATGT AAATAAATTT
  TTCTATTGGC TCTCTCTACT GTGTTCAGAG AGATCTAACG CCAAGCTATA TTTTACTAAT
  W
  AAACTTTGTG AAGTAGCAAG TCCTTCTTTT CAGAGAAAGG CTCTCAATAG ATTGTTCAGG
  CTGGGCTCAA GTGATCATCC TGCCTCCACA GCCTCCAGTA GCCAGACCTG TCCACCTCAC
  GTCCACATTA CCATAGGAGC TCTTGGGCTG CCTTGGGCAG GAGAGGGCGG TGACAGAATA
  CAAGGTCTCA CTATACAGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45987303	mCV23495470	ABI	CRAMUS_MOUSE	f	SNP	A	A						T		T
ss60887168	NES15966018	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	T	T		T	T	T	A	A	T	A	A	T
ss133233750	ENSMUSSNP339347	ENSEMBL	ENSEMBL_Sanger	f	SNP		A								T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30999161					SNP	A	A	T	T	T	T	T	T	T	T	T	A	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60887168	NES15966018	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56879899 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm53332	predicted gene, 53332			within coordinates
Nt5c3	5'-nucleotidase, cytosolic III			Intron
				Noncoding-Transcript-Variant
Rr379412	regulatory region 379412			94 bp downstream
Rr631115	regulatory region 631115			1281 bp distal
Rr631116	regulatory region 631116			538 bp distal
Rr631117	regulatory region 631117			153 bp proximal
Rr631118	regulatory region 631118			237 bp proximal
Rr631119	regulatory region 631119			463 bp proximal
Rr631120	regulatory region 631120			775 bp proximal
Rr631121	regulatory region 631121			1977 bp proximal
Tssr1860	transcription start site region 1860			770 bp upstream
Tssr61149	transcription start site region 61149			1076 bp upstream
Tssr61150	transcription start site region 61150			1023 bp upstream
Tssr61151	transcription start site region 61151			995 bp upstream