rs30998150 SNP Detail

Summary

• ID
  rs30998150
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:174420693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAAAAAAC GGACTGAGTA
  TTCTTGCTAT ACACTGTGAA AGACTTGTAT CTAGTGGAAG TTTTAGCTTT TAAGTGAGAA
  ACTGGGAAAT GTTGTTCTTT AAGGTATTGA CTGTCTGCTT CCTTTCCAAT CCAGAACCTA
  AATCCTCTAT TTTGGAAAGC CCGAAAAAAT GCTCAAATGG TGTCCAGCAG GTAAGAGAAC
  R
  TTATTAGGAC GGCAAATCCC CGTCTCTGTT ATTCACCTTA AAACTTAAAA ATAGTAGTGT
  GACTGACATT CCTCTCTGCA CAGATGGCTG GGCTGCCCCG GTATTAGCTC ACAGGGGAAT
  CTACTGAGGT GAAGGGAAAT GCTTGTTTTC ATTTACAGTT TGTGATCCCA TTCAGCCTTG
  AAATAGAAAG TAGTACTAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44985471	mCV24603847	ABI	CRAMUS_MOUSE	f	SNP	A	G					G		G
ss49534524	NES12820197	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	A	G	A		G	G	G	G		G	A	G	G		G
ss146288725	ENSMUSSNP5560978	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
ss320142618	CHEV_1_176523258	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30998150					SNP	A	G	G	A	G	A	G	G	G	G	G	A	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49534524	NES12820197	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:174420693 () rs orientation: forward

Symbol	Name	Function Class
Fmn2	formin 2	Intron
Rr423776	regulatory region 423776	506 bp distal
Rr423777	regulatory region 423777	245 bp distal
Rr423778	regulatory region 423778	1927 bp proximal