rs30998116 SNP Detail

Summary

• ID
  rs30998116
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26325769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATAAGCAT CTCCAGGTGG
  ATTAGCAAAG AATTAGGTTT AGAAGGCTTA TTTTAAGTGC AGTTGAATTA ATTGTGTTTA
  TTCCTTGAAA TCTATTGATT TTTCAATCCA ATATTATTCC TCTGTCTACA GTAGGTGATC
  CAGAAAGGAA AATGATTTGG GGACAAAAAG AAATATAGAT ACATTGTCCT AAATAGGCCG
  K
  CTTAAAACTA ATCATCACCT TGAAAGCTTC TAGAACTACA GTTCACTGTG TCTGTTCAAA
  GACCACCTTA TTAATTAACT CTTTGCTTGG ATTATTGCTA TAAATGTTAT GAGGTGGTTC
  AATGAAAAAT TTGAATTTAT GGAAGCTGAT TGTAAATGTT AGGAAATACC ACAGATTTGG
  CATTAAGTAG TAGATGCCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45487961	mCV22681048	ABI	CRAMUS_MOUSE	f	SNP		T	G					T		T
ss51445350	NES14436692	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	T	T	G		T	T	T	T	T	T	G
ss134692897	ENSMUSSNP298269	ENSEMBL	ENSEMBL_Sanger	f	SNP			G							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30998116					SNP	T	T	G	G	T	T	G	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51445350	NES14436692	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26325769 () rs orientation: forward

Symbol	Name	Function Class
Nlgn1	neuroligin 1	Intron
Rr574313	regulatory region 574313	207 bp distal