rs30998115 SNP Detail

Summary

• ID
  rs30998115
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152047532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTTCTGA CACAATCTCA
  AGAATTTCTG AAAAGGAGAT TTTGCTCTGG TGTTGTGTGT ATGTGTGTGT TTTGTTACTG
  TTTTCTAGAA ATATATGTAT ATGTACATAT ATATATATGT ATATATATAT ATTATATAAA
  TACTTGTATG CATGCCTCTT ATAAGCTTTA CATATTTCTA TATACTTATA TATATTTCAA
  R
  TATTTTCTTC TTCTTCTCCT TCTTCTTTTT TTTTTTTTTG AGACAGCATC TCTCTGCATA
  GCTCTGGCTG TTCTGGAACT CTCTTTGTAG ATCAGGCTGG CCTTCAACTC ACAGAGATCC
  ACCTGCCTCT GCCTTCTGAG TTCGGGGTCT AAGAGCGTGT GCCACCACGC CGTGCTTTCA
  CACATTCTCT CTTTGTGAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45487960	mCV23507844	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss136102524	ENSMUSSNP2451251	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss321028685	CHEV_3_152004859	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30998115					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152047532 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13947	CpG island 13947	1240 bp distal
Miga1	mitoguardin 1	1488 bp upstream
Rr587531	regulatory region 587531	1533 bp distal
Rr587532	regulatory region 587532	998 bp distal
Rr587533	regulatory region 587533	1062 bp proximal
Tssr36215	transcription start site region 36215	1479 bp upstream