rs30997520 SNP Detail

Summary

• ID
  rs30997520
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101226566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGGGCTAA TGCCAGCCAT
  GCGGAGCCTG CACCTTTTAC CATTTTCTTC CTTTCTGCAT CAGGTAAGGC CTGGGTGTTG
  TCTGGGTCTG GTTTTCTACA CGGTGAGCCC CAGAAGACAG GAACCTGAAG CATCAAATCT
  TTAGACTGAC GGAGCCCTGT GTCCTACCTT CTCTCACCAT GCAGAGAGAT GTTGCAGTTC
  Y
  GATGAGCTGT GGCAATACAC TGGTCCTTGA GTATGCCTGG AATGGTAAGG TCCAACTGAA
  ACCAATGCAG TTTGGTTCTC CAAACACCAG GTCTCACTCT GTAACATAAG CACTGAGGGG
  TGGCAGGGTT GTGGACAGTT GGACTGGTTT TAGATGATTG GGGCTGACAT TACCTAGTCA
  GAATGGCTGA GATGCTAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45487954	mCV23816606	ABI	CRAMUS_MOUSE	f	SNP		C					T		T
ss46813526	NES10713836	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	C		T	T	T	T	T	T	T	T	T
ss135546541	ENSMUSSNP1808670	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30997520					SNP	T	C	T	C	T	C	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813526	NES10713836	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101226566 () rs orientation: forward

Symbol	Name	Function Class
Gm64409	predicted gene, 64409	within coordinates
Rr582007	regulatory region 582007	1133 bp distal
Rr582008	regulatory region 582008	840 bp distal
Rr582009	regulatory region 582009	925 bp distal
Rr582010	regulatory region 582010	523 bp distal