rs30996926 SNP Detail

Summary

• ID
  rs30996926
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:107513233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGTCTATCA GTCATTGTAG TCATTGGTAC TTTTCAGTGC
  CCAGAATGAA AAAGATAGTC TTAGCAGATT TCCACTAGTG GCAAGCTCCA CACATATACA
  Y
  GGGGTATCTG GAAAATTGTT CAAGTCTATC TTTAAAACAA TTGAAAGCAT TTAGTGTGAA
  GAAGCCAAAG GTGTTAAGCA TTCTGAAATG CTTAGGTTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45985183	mCV23133345	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss133484786	ENSMUSSNP2009958	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30996926					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:107513233 () rs orientation: forward

Symbol	Name	Function Class
Lrrn1	leucine rich repeat protein 1, neuronal	Intron
Rr636003	regulatory region 636003	873 bp distal