rs30996752 SNP Detail

Summary

• ID
  rs30996752
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:126388821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTATTGC CAGGATTTAA
  GATCCAAGCT CATTTCAGTT TTGTTATTAA AAATGTTCAA ATTTAGCCAG GCATGGTATT
  TCACACCTTT AGTCACAGGC TGGGGAGGCA GAGGCAGGTG GATCTCTCAG TTTGAGGCTC
  AGCCTGGTTT GCATAGTGAG TTCCATGCCA TTTAAGAGAG ACACACTGAG ACTATTCCAA
  Y
  CAAATAAAAA TGTTCAAATT TAAGGACATA AAAAACAAAA TTTGCTTTTA AAAACAAAAA
  GGAATCAAAG CTATATAAAA ACCACAGAGG AACTTCAATA AGCTTCCAAG GGTGTCCCAC
  AATGACAACT GAACAGCAGA GGCCCCCAGG TAGGAACAAT ACAAGACAAA GCGGGACGTG
  TGCTGATCCC ACGTGCTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45486983	mCV24012083	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss135836817	ENSMUSSNP1068222	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss320946569	CHEV_3_126298090	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30996752					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126388821 () rs orientation: forward

Symbol	Name	Function Class
Camk2d	calcium/calmodulin-dependent protein kinase II, delta	1130 bp upstream
Cpgi13785	CpG island 13785	880 bp proximal
Gm17225	predicted gene 17225	within coordinates
Rr367547	regulatory region 367547	976 bp upstream
Rr584646	regulatory region 584646	1289 bp proximal
Rr584647	regulatory region 584647	1714 bp proximal
Rr584648	regulatory region 584648	1826 bp proximal
Tssr31566	transcription start site region 31566	1154 bp upstream
Tssr31567	transcription start site region 31567	1180 bp upstream
Tssr31568	transcription start site region 31568	1236 bp upstream
Tssr31569	transcription start site region 31569	1641 bp upstream
Tssr31570	transcription start site region 31570	1789 bp upstream
Tssr31571	transcription start site region 31571	1821 bp upstream
Tssr31572	transcription start site region 31572	1930 bp upstream