rs30996348 SNP Detail

Summary

• ID
  rs30996348
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17763299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTCCTGA TATTGTGCAT
  TGATTTCTTT GTAAACTATT TCACATGAAT GAAAGCAACA TTTTCTATTT TTAGTTTTCG
  GCCCGGGGGT GGGGGGTGTT GCAGACTTTA AAAAAGCAAC TCATCTGCAA ATTCAAATTC
  TCATTGACAC ATCCAGTTTG CGTAAAGTAA AAACACAATC ATAGACATTT TAACTGAGAC
  R
  GTTCCATAGT TGTTAGACCC TTTCTTGCCA TAGCAACTTA GTTTTTCTTC TTGCTTTTTA
  TTTTCATTTT AGTAATGGAA ATGTTCATCT TTTAGGCACT TTGGCCAGTA TGAAGATTTT
  TTTTTTTCTG ATGAATGCCT TCAGGATTTT CTTGACGTGA CATTTTTAAG TAAATAAAAT
  TAAATTCTGT CTGTGGAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45984872	mCV22806620	ABI	CRAMUS_MOUSE	f	SNP	A	G					G		G
ss47815376	NES11711312	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G		G		G	G	A		A	G	G
ss133022199	ENSMUSSNP5962999	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30996348					SNP	A	G	G	G	G	G	G	G	G	G	G	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47815376	NES11711312	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17763299 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm52895	predicted gene, 52895			1151 bp upstream
Rr379001	regulatory region 379001			1964 bp downstream
Rr626856	regulatory region 626856			635 bp proximal
St7	suppression of tumorigenicity 7			Intron
				Noncoding-Transcript-Variant
Tssr55099	transcription start site region 55099			415 bp downstream