rs30996339 SNP Detail

Summary

• ID
  rs30996339
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17901126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGATAAAAGA TGATGATATT CTTTTAAACT ATAAAACCCT
  GATAGTTTTG AACTGTGATA AGACATGGTC TTTCTTCTCT AAACAAGCTC TGCTTTTAGG
  S
  AAAAAGCAGA GTTCAGGCAG TCTCTTCCTG TTTTCACTGA CTATCGCACA TCTTCAGCTC
  AAAATAACCC TCATGACAAA GTTACATATT TTAGGGTGG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45487081	mCV22664176	ABI	CRAMUS_MOUSE	f	SNP	G	C	G
ss134654085	ENSMUSSNP3635410	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss320673842	CHEV_3_17746962	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30996339					SNP	G	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17901126 () rs orientation: forward

Symbol	Name	Function Class
Gm42187	predicted gene, 42187	within coordinates
Gm65968	predicted gene, 65968	within coordinates
Rr573861	regulatory region 573861	534 bp proximal
Rr573862	regulatory region 573862	1411 bp proximal