rs30996179 SNP Detail

Summary

• ID
  rs30996179
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56881416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAATAAAA TAAGATGTTG
  TACGTGGCTA AACTTCACTA GCTTCTGCTG TGGGTGTGGC TCAGTACACA GAGGGACTGT
  GGCTCAGTAC ACAGAGGAAC TGTACAGAAC TCATAACTCC CTGCTTTAAT TCCAAGAAGT
  AAAAAAAAAA AAAAATAACT AAATGACATG AACAAATAAA TACATTTTAC TAAATTCTAA
  R
  TATGTGGGCT TTCCTCAGCC TATATCCCTG GCACCCTGTA TAACATATGC CACCATTCTT
  AGATTTCCTA AGGGAGTGAA GGCATACAGC TGCTAAGTAG CAGCAATAGA TTCAGTGTAA
  AAGCACAGGG AGCCTAAAAT AGGACACATG ATAGGATTCA TGGCAGCACT AACAGCCTTC
  CTTCATTGCC TGAGTGGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45984769	mCV23495492	ABI	CRAMUS_MOUSE	f	SNP		A	G					G
ss60887165	NES15965978	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G	A	A	G	A	G
ss133233765	ENSMUSSNP4021032	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30996179					SNP	A	A	G	G	G	G	G	G	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60887165	NES15965978	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56881416 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm3793	predicted gene 3793			1480 bp downstream
Gm53332	predicted gene, 53332			within coordinates
Nt5c3	5'-nucleotidase, cytosolic III			Intron
				Noncoding-Transcript-Variant
Rr379412	regulatory region 379412			1611 bp downstream
Rr631117	regulatory region 631117			1343 bp distal
Rr631118	regulatory region 631118			1259 bp distal
Rr631119	regulatory region 631119			941 bp distal
Rr631120	regulatory region 631120			within coordinates
Rr631121	regulatory region 631121			460 bp proximal
Rr631122	regulatory region 631122			1760 bp proximal