rs30994060 SNP Detail

Summary

• ID
  rs30994060
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135393660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTCTTCT CTATATTCTC
  TCCTCTTGAT TTCGCAATCT TTACCAAGTC CTTTCTTATA TCAGGCTTTG AAGTAGGCTT
  ATCTTCTTCT CTAAACTATT TGTTGATCTC CTAATCTCAT CTGAAAGGAT TAACTAGTTT
  GCAGGTACAT CCTCTCAGAC AATGCAGCAG CTAGGAGGGG AAGGCAATTC CATCTGGCAG
  R
  AAAGAATGCC TTTCCTCCCC TCCCTCCTTC CCTCCCGCCC TCCTTCCCTC CTGTCTTCTT
  TATCTCTCCA TCTCTCCCCC TCTCCGCTTT CTTCCCAACG AGAGACAATG TATACTCATT
  AAAGCAACAG CACAACGATG ATAAGAGCTA TTAACTCTAC CAAACTATGT GGTTTTCAAG
  CCTCTCCCCA GACCTTCCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45487904	mCV25339262	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss135928518	ENSMUSSNP5929309	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30994060					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135393660 () rs orientation: forward

Symbol	Name	Function Class
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	Intron
Rr585765	regulatory region 585765	1057 bp distal
Rr585766	regulatory region 585766	72 bp proximal
Tssr31841	transcription start site region 31841	1221 bp upstream
Tssr31842	transcription start site region 31842	1240 bp upstream
Tssr31843	transcription start site region 31843	1252 bp upstream
Tssr31844	transcription start site region 31844	1274 bp upstream
Tssr31845	transcription start site region 31845	1335 bp upstream
Tssr35822	transcription start site region 35822	within coordinates
Tssr35823	transcription start site region 35823	1356 bp downstream
Tssr35824	transcription start site region 35824	1879 bp downstream