rs30994059 SNP Detail

Summary

• ID
  rs30994059
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37727679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCCGTGACT TGTCACATGA GCCAAACTCA TGACCAAAGT
  GATAAAAACA TAAAGTTCAG GGCCCAACTG TTTTACCTCA TGCCCATCAC AAAATCCCCC
  R
  TGTCTTATGC AGCCACATCA ATACCTTCAC CATCTTTCCT AAAATCACGC TGTTTTTCAT
  TTTTCCTAAT GAAGTACAAT TCCCTCAGAT TGTAACACA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45487903	mCV22777425	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss134810670	ENSMUSSNP4160184	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		A
ss320711640	CHEV_3_37572452	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs30994059					SNP	G	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37727679 () rs orientation: forward

Symbol	Name	Function Class
Rr374835	regulatory region 374835	within coordinates
Rr406863	regulatory region 406863	within coordinates
Rr575537	regulatory region 575537	80 bp distal
Rr575538	regulatory region 575538	86 bp proximal
Rr575539	regulatory region 575539	1445 bp proximal
Tssr33054	transcription start site region 33054	1105 bp upstream