rs30993430 SNP Detail

Summary

• ID
  rs30993430
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90336003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGTCCCA AGAATTAGCA
  TAAGCCTGGC CCTCAGCACG ACCTAGTGCA AGGAATGATG GCACACGCTT CCCTTTTTCT
  GTAGACATGG CCGTGCAGAA CTTCGTGGGA GATGCCTGTC GTGGTGCCAC CTGGGTTGCA
  CTTCACAATG GAGGGGGTGT AGGCTGGTAA GAAGACATCA GAAAGCAGGC TGTGGGCTGA
  Y
  ATGGAGAACA TGCGGTCCTC TTGGGGCAGG GGCAGGTCTG GGGGCCTGCA GTTCTCGGAC
  TTAGGTCTCT GACCACTTGT TCTATTGAGG GCTTTGTGTG AATACATTCC TCATGTGAGC
  TGAGAACCAG GGGTCGGTAT GTTGGGGTAC AGAAGATGGA GGGACAGAAA GGGAGACTTG
  CATAAAGCAA CTCCAGAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45985835	mCV23962470	ABI	CRAMUS_MOUSE	f	SNP		T	C					T
ss60907184	NES15949558	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	C	T		T	T	T	T	T	T	T	T	T
ss133377469	ENSMUSSNP5509162	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30993430					SNP	T	T	C	T	T	C	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60907184	NES15949558	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90336003 () rs orientation: forward

Symbol	Name	Function Class
Rr634185	regulatory region 634185	448 bp proximal
Rr634186	regulatory region 634186	918 bp proximal
Uroc1	urocanase domain containing 1	Intron