rs30990927 SNP Detail

Summary

• ID
  rs30990927
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:101191915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAATTTTTC CTATTTCCCT
  TCTCTCTAGC TTTCAGACCA CAGTGTCTTC CCCATAGGCC TCCCGAGTCT AATTCCATTT
  CCGCCCAACC TACAAGCATG CAGAAATGCA GTTTCCTTTC CATCCTGAGA TTCTGTGTAT
  CTCAGAATAA GGAGATGATG GATGCATCAC CATCCAGCAG AGCACATCAG GTAGTCTCAG
  R
  GCTGCCTGGC AAGAAACTGC CTGTCTTTCT AGAGTGAAAA ACCTTCTTCG TAGTAAGATC
  CAATTATTTC AAGAAACACT GATCAAATTT TAAAAGGCTT TAAAGGCAGT TGGAGATCAC
  CTACAGTTCT GTTATTCGGG ACTATTAACA CTTTGAGGCA TATCTTTATC GGATATTTTC
  TATGCATAAA CCCATAATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45487211	mCV22286679	ABI	CRAMUS_MOUSE	f	SNP		G	A				G		G
ss46813190	NES10715767	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G		G	G	G	G	G	G	G	G	G
ss135546244	ENSMUSSNP809323	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30990927					SNP	G	G	A	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813190	NES10715767	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101191915 () rs orientation: forward

Symbol	Name	Function Class
Cd2	CD2 antigen	Intron
Rr581990	regulatory region 581990	993 bp distal
Rr581991	regulatory region 581991	1182 bp proximal
Tssr30894	transcription start site region 30894	442 bp downstream
Tssr30895	transcription start site region 30895	1966 bp upstream
Tssr34778	transcription start site region 34778	1438 bp upstream
Tssr34779	transcription start site region 34779	630 bp upstream