rs30990647 SNP Detail

Summary

• ID
  rs30990647
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153365120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGCACCTC ACTCGTGAGA
  GCAAGCATCT CAGGCTAGCT CCAGCCCGCA GACAGACCCT TGTTCTTTAG CCTCTTGCTG
  TGTCCCTCAG CAAATGTCAC TCAGCACACC AGACAAGTCC TGGAGCTCCC TATGACCGGG
  TCAGTTATAA TATGTGGACG ACACTTGCAC AAGCCTGCCT GCTACAGCCT AGGTAGCCAC
  R
  GGTGACAAGT GGAGAACAGA GAGGATGCAG ATCAGGCAGG GCAAGAAGGG CTAGCCCAGT
  CAGGACGATG CTTACCTTGC GAACATACGG GGCGGAATTC ATCCCCAGAG CATATTACTA
  ATGTGATGGA CCTTTGTTAC CAAAGAACTG TACTTAGAAA AGGAAACAAA CTTCAGAGAA
  ATAAAAATCC CAGCAACAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45487698	mCV24207563	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss136110567	ENSMUSSNP1021862	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30990647					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153365120 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587719	regulatory region 587719			623 bp distal
Rr587720	regulatory region 587720			890 bp distal
Rr587721	regulatory region 587721			188 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant