rs30990449 SNP Detail

Summary

• ID
  rs30990449
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121393872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAATATTA GTTAATATTG
  TCATTTGGGA AAACCCTTTT CTTCTCAAAA GGGCAATTTA AGTGACTTAT CTCTGCTAGT
  ATGTGGGGAC CGTGTTGTTA GGAGCAATAT TTTTGATGTA AGAGACCTCA TCTTGGTGGC
  TTAGTTCTTG CCTGAAAGGT CTCATAAAAC ATGGGATTTA TTGCTTTTTT TTTAAAACTT
  Y
  ATTTTTTACT AGTGGCTCAT GCCTTTAATC CCAGCACTCA GGAGTCAGAG GCAGGCAGAT
  TTTTGAGTTC GAGGCCAGCC TGGTCTACAA AGTGAGTTCC AGGACAGCCA GGGCTATACA
  GAGAAACCTT GTCTCAAAAA ACCAAAAGAA AAAAAAAAGA AACTACAACA TAATTTTAGC
  CTACTCCAAC ATAGGGGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45487104	mCV23989760	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss135724829	ENSMUSSNP5275445	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss320904154	CHEV_3_121303141	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30990449					SNP	C	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121393872 () rs orientation: forward

Symbol	Name	Function Class
Gm33485	predicted gene, 33485	within coordinates
Gm65954	predicted gene, 65954	within coordinates
Rr584124	regulatory region 584124	403 bp proximal
Rr584125	regulatory region 584125	1598 bp proximal