rs30990077 SNP Detail

Summary

• ID
  rs30990077
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115749997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCAGTAGTTA AAACCATTTA TTGCTCTTGC ACAGGTCCTG GGGTCCCAGT ATGCATGTGA
  CAGCTCACAA CAGTGGGTAA CTACAGTTTC TTGGAGTCTA TTGCCCTCTT CTGTCCTTCA
  TGGGTACTGC AATATATATA TATATATATA TATATACACA CACATATATA TATATACACA
  CACATATATA TATACACACA CATATATATA CATATACATA TACACACATA CATATATACA
  CACATATATA TACATATATA CATACGCATA CATACATACA CACACACACA CACATATATA
  Y
  ATATATATAT ATATATATAT ATATATATAT ATATACACAC ACATATACAT ATGTGTATGT
  GAGCAAGAAA CTCCTAGATA CAAAATACAA ATAAATAATA ATGATAAAAT GTAAAAAATT
  CCAATTTTGT CTCCACTGTC ATTTACTAAA TAACTGCCTA AGGTGCCAAG TGATTGCTAT
  ATTTCTCCCT GGGAGTATTC ACAGTCCCCT GAAGGGCTGT CTCCCCTTCT CATTCATGAA
  ACAATGACTT TCTTCTGGGA TGGCCACATA GGTGTGAGCG AGACAGGAGC AAGAAGACTA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45984800	mCV25308736	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30990077					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115749997 () rs orientation: forward

Symbol	Name	Function Class
Cand2	cullin associated and neddylation dissociated 2 (putative)	1521 bp upstream
Cpgi17874	CpG island 17874	1523 bp proximal
Rr368154	regulatory region 368154	1158 bp upstream
Rr637052	regulatory region 637052	1900 bp distal
Rr637053	regulatory region 637053	844 bp distal
Rr637054	regulatory region 637054	624 bp distal
Rr637055	regulatory region 637055	177 bp distal
Rr637056	regulatory region 637056	190 bp distal
Rr637057	regulatory region 637057	1012 bp proximal
Rr637058	regulatory region 637058	1513 bp proximal
Tssr58325	transcription start site region 58325	1528 bp upstream