rs30988980 SNP Detail

Summary

• ID
  rs30988980
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104491775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAG ATGTATGACT GTATAAAAGG
  R
  AATGGCGGGT CAGATATAGA AGTAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
ss45485955	mCV25401314	ABI	CRAMUS_MOUSE	f	SNP	G	G		A		A
ss46831473	NES10729003	PERLEGEN	MM_PANEL2	f	SNP	G		G		G	A	G		G		G
ss135569774	ENSMUSSNP762390	ENSEMBL	ENSEMBL_Sanger	f	SNP		G				A
ss320861213	CHEV_3_104388382	CHEVERUD	SCREENING_POP	f	SNP								A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
rs30988980					SNP	G	G	G	A	G	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46831473	NES10729003	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104491775 () rs orientation: forward

Symbol	Name	Function Class
Gm64517	predicted gene, 64517	1181 bp upstream
Rr582544	regulatory region 582544	895 bp proximal
Rr582545	regulatory region 582545	1192 bp proximal