rs30987590 SNP Detail

Summary

• ID
  rs30987590
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116945261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGTTGCA ATCATCTACT
  TTATTGTTTA CTTTATAGGC AGGGAAGATC AAATATTCAC ACTTAAAAGT GTAGAATGGA
  CATTGGTACT GAATTAGCAA ACCATAAATG CATGAAAATT AATAAAAGCA TTATACTTTG
  TCTCATTTAT TCTGTTTTCT TAATATTTAG ATAGCTAATA TTTTTAAAAG CAAGCAGGCA
  W
  GTTAGTCCCT TACTAATACC CCTTTAATGG CTTCCCATTG CTTTTAACAC TTACATTCAC
  AACATGGCCT CTAGGTTCTG GTCCCTACAT GCTTTTCTAG ATTCTTTAGC CATGGTTTCT
  AACTTTTCTG GCCCTGGAAT GTTTCAGGCC ACCGCACTCT CTAGAGTTTT TTCTTATGGA
  CTTGCCCATG CACCTTTCTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45485643	mCV24025171	ABI	CRAMUS_MOUSE	f	SNP	A	T
ss135684996	ENSMUSSNP312493	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs30987590					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116945261 () rs orientation: forward

Symbol	Name	Function Class
Rr583834	regulatory region 583834	1402 bp proximal
Rr583835	regulatory region 583835	1500 bp proximal