rs30987563 SNP Detail

Summary

• ID
  rs30987563
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132792813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCATAGGTA TAATACTTAG ACATTTAGGC TATTTGCATT
  TTCATTCCAA TTAATATATC TTGGCTTTGA CAAAATATTT TACATAAGAA AAGAGAAATC
  R
  GTTTTTGGTT TTTTTTTTAA ACCTAAACTC TTAAAAAAAA AAAAAAAGCT GCTAGGCTAG
  GCAGCATATG CCTTTAATCC CAGCACTTGG GAAGCAGAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45486405	mCV25027865	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	G
ss135916516	ENSMUSSNP5118385	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs30987563					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132792813 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gstcd	glutathione S-transferase, C-terminal domain containing			Intron
				Noncoding-Transcript-Variant
Rr398027	regulatory region 398027			823 bp downstream
Rr585498	regulatory region 585498			871 bp distal
Rr585499	regulatory region 585499			986 bp distal