rs30987315 SNP Detail

Summary

• ID
  rs30987315
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:34689155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCCACGCCTG GGCTGTAGTG TTTTGTGCGT CAGGTGTGCA TGGCTGTCCA GTTCTGCAGA
  CTCTGAGATG TGTTCAGTTT GGCCTAGTGA GCTCCTTGAC GGACTCGGTC CCTTTTAGCT
  CAGTGCTTCC CTTGCTGCTC TTTACTATGT TCCCCAAATT CATGGGGTTT TCTTGAGTCG
  AGATTTCAGG TTTCCTAGAA ATACTTCGTT TAGTCCAGAA AGAGTTGTGT TTAATCCTTG
  ACCTTCGGGA TGATCAAGCT TTGATGTTTG TGTGACAGCT GTGGACATAC ACACTTAAAG
  Y
  TATGGAACCA GGAAAATGGC GTAGTTCATC CTACTGCCGT CCAGGGGAAA GAATTTGAAA
  ACATCGAAGC GAAATTACTA AATGATTGGC ATAATTTTAT AAGAATTTTT AGAAATGACA
  GAATAAATGT ATCCAAAATG CCGTCGTCAA TAGTACTGGG TGTCTGAAGA GATGGCTCAG
  TGGTTAGAAG CACTGGTTGC TCTTTCAGAG GACTCAGATT TGATCTCTAG CACCAGCATG
  CTAGCTCACA GTGGTCTGTA GCTCCAGGTT CCAGGAATTC AAAGTCCTCC CACTTCATGG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45984277	mCV24689568	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss133112995	ENSMUSSNP472770	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30987315					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:34689155 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cald1	caldesmon 1			Intron
				Noncoding-Transcript-Variant
Gm38787	predicted gene, 38787			75 bp downstream
Rr628364	regulatory region 628364			1582 bp distal
Rr628365	regulatory region 628365			994 bp proximal
Tssr60240	transcription start site region 60240			942 bp downstream