rs30987222 SNP Detail

Summary

• ID
  rs30987222
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101206643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCTACCT ACTTTAAAAC
  AAAGTCTCTA CGTTACCCGG AGCTCCTTAA GTAAGTTAGT CTGCTGGCCA GCCAGACTCA
  GGCCTCCCCT CCCCTCCCTG GAGCAGGACA TTAAGTGCAC ATTAACAACC AGTGTTTCCA
  CCCAGGTTCT GAGGACCAAA CTCAGGTCTT TATACTTACA GGGCAAGAGT TTTACCAAAC
  R
  AGCCGCCCTG CCCCTGTCAT TCCACCATTT GAGTTGCGCT TTCCCATCTG TTTTCTCTCG
  TCTACCCATT ACACACCCGT TATCAGATAA TGCAGGTGGC TTCTGTTCTC AGCTCTTTCA
  AAATCCTCTT AAGAAGGGAA AGCCAGGGAA CCCCTGAGTC TCTCTGCACC CCTGGGAGCC
  CCACCTTGCA TCCACCCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45485376	mCV22287376	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss135546313	ENSMUSSNP125227	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
ss320851745	CHEV_3_101103250	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30987222					SNP	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101206643 () rs orientation: forward

Symbol	Name	Function Class
Gm65445	predicted gene, 65445	within coordinates
Rr582002	regulatory region 582002	1831 bp distal
Rr582003	regulatory region 582003	696 bp proximal
Tssr30898	transcription start site region 30898	1821 bp downstream
Tssr30899	transcription start site region 30899	1791 bp downstream
Tssr34787	transcription start site region 34787	870 bp downstream
Tssr34788	transcription start site region 34788	907 bp downstream