rs30986540 SNP Detail

Summary

• ID
  rs30986540
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60413007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTAATTGA CATATACCAT
  ATTTATAGAC ATTTTTTGTT TTAAGAATTG AGATAGGGAA ACTGATGAAT AATAGTGTTT
  TCATATTTAT ATTTTTATGT AAACACTGCG ATATTCTTGG GAGAAATAAA AGTCCTAGCA
  TATCCATGGT TATGTTTTGA TACATATTAT TAAATTTAAA AAAAAACATA GCAGACTGTT
  W
  TCTCTGTTTT CTATGACACA GTGTTAGAAA GTTGTTTGTC ACATGTGCCT GTGAGATGCA
  ACAGTCTTTG AGAGACTTTT TAAAATGTAG ACTGTTTAGG GTTCTGTTTT GTACTTTCCC
  CACTTTTCAA AGGTTCTCTC TCTAGATTTC TGTGATTATT CTTTGTTAAG CAGTACAGGA
  CACATCATCT GAAGACTACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss45486292	mCV22694976	ABI	CRAMUS_MOUSE	f	SNP	A	T	A	A
ss135219305	ENSMUSSNP3618183	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T		A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs30986540					SNP	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60413007 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbnl1	muscleblind like splicing regulator 1			Intron
				Noncoding-Transcript-Variant
Rr577412	regulatory region 577412			270 bp distal
Tssr29286	transcription start site region 29286			548 bp downstream