rs30984300 SNP Detail

Summary

• ID
  rs30984300
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:140458319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACTCTTG ATACTCAAGC
  TTATTGATTG CTTGTTAGAG GCATTTGTAG AAAACAACAA CCATTTGTTC TTCATGGTCA
  AATTCTCTTC TGCATCGAGT AACTGAAGTA TTCTATAAGT ATTGTCGTAA TCAAGAGTAA
  TATCTGTATT TTTTAGAATT ATGCCATAGT GCTTCTGATT TATAACTCAC AGTTCTTGAT
  R
  TATCATATGG TTTGTAAGTA GTGCAATTAT ATTCTCAAGT GAAAGGGCAA CTTAGGATGT
  ATCTTGTCTT TGGTTTTGGA AATACAAACT AAATGAACTT GCTTCCCTTT CCTAGAAGTG
  CTGCCCCTGT TGTGACACTG TGTTTCATTT TGTAACCCAT CTGCTACATA GGCCAGATAT
  GCATTTTCTG GATGCAATCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss44983736	mCV24816291	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss145604025	ENSMUSSNP3646665	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs30984300					SNP	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:140458319 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kcnt2	potassium channel, subfamily T, member 2			Intron
				Noncoding-Transcript-Variant
Rr419878	regulatory region 419878			970 bp proximal
Rr419879	regulatory region 419879			1134 bp proximal
Rr419880	regulatory region 419880			1769 bp proximal