rs30982490 SNP Detail

Summary

• ID
  rs30982490
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143655851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGTTAAG GTTTTCACCC
  CACAGGCAAC TTGTCGACCC GTGGGAGAAT CTTCTCGGGA CAAGAGTGGC ATTGTTAGAG
  ACCTAACAAG TGACTCTTGG TCTCATCATG CTGTTTCCTT TTATACAGCT GCTGGATGGC
  TGACAGCTTT GGCCTTTCTA TAGGGTCCAT TCACTTCAAC TTATCTAGAT CTTAAACCCT
  Y
  TTTTGAGCAG CTTCCTGTTG CCCAGAGCAG TCCTAGCAAA GATGGCGGCA TTTCCATCTG
  TAGCTAAGAT GAAAGGCACT TCTCTCTTTT GACTTACTGA TTAGATGTGC ATTAGTTTCA
  TGACCTTCTA TAACAAATTT TTACAAGCTT TGTGGCCTCA CAGAATCTTT TATCTTAGTT
  CTGAAGACTA CAAGGTGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss45485391	mCV22812352	ABI	CRAMUS_MOUSE	f	SNP	T	C				C
ss51658667	NES14642473	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C		T	C	C	C	C	C	C	C
ss136027357	ENSMUSSNP6541078	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30982490					SNP	T	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51658667	NES14642473	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143655851 () rs orientation: forward

Symbol	Name	Function Class
Rr406686	regulatory region 406686	1604 bp distal
Rr586568	regulatory region 586568	1939 bp distal
Rr586569	regulatory region 586569	11 bp distal