rs30979846 SNP Detail

Summary

• ID
  rs30979846
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86770415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCC AGGTCCGAGC CTAGGACACC
  Y
  GCCCGGAGCC TAGGACCCAC ACCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45984387	mCV22848132	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss133359402	ENSMUSSNP4345170	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss321847288	CHEV_6_86743427	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30979846					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86770415 () rs orientation: forward

Symbol	Name	Function Class
Anxa4	annexin A4	Intron
Cpgi17670	CpG island 17670	within coordinates
Rr633515	regulatory region 633515	within coordinates
Rr633516	regulatory region 633516	141 bp proximal
Rr633517	regulatory region 633517	1533 bp proximal
Tssr61864	transcription start site region 61864	89 bp downstream
Tssr61865	transcription start site region 61865	157 bp downstream