rs30976593 SNP Detail

Summary

• ID
  rs30976593
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:90047820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTTCCAT TCTTGATATT
  TTAAGTGTCC TCTCATGTCA CCTAGTTAAA TATCATTTCA TTTGTTGACC CAGAGCCTGT
  TTGAGGCTTT ACTCAAAGTG AAAACAGAAC ACACAACAGA TCTTCTCCAA TCTTTCTCTT
  TCCCCCTGAT CAGTTTCCAG TTATTTCTTT AGAGTATATG TAAGTGATAG CACTGAAATC
  W
  CTAGATTCTT AGTGTGGTTA GGTGCCTGTA GGTGACATTT TCTCACCTTG AATGACAGAT
  AACAGTTTTA CTGTGTGAAG GGTGCCTCTG GGTATGTTCA GCATTCTAAA GTGTGTTTCT
  CTTTAAGAGT ATTTAGCTGT GTGAAGTGTG TGGCTGAGTT TGTGTTCCCC TGAATGAAGT
  GTGCTCTGGG GAGGTATTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48002885	NES11895964	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30976593					SNP	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48002885	NES11895964	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90047820 () rs orientation: forward

Symbol	Name	Function Class
Vmn1r49	vomeronasal 1, receptor 49	1248 bp downstream